As pointed out in one NPR story on this, so-called "member stations" are both NPR's customers and it's bosses. Keep them as customers, lose them as bosses.
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The money has to come from somewhere. Federal funds are dwindling, and the stations don't want NPR to compete with them for listener money. NPR gets the bulk of its money from the stations, and in return gives them representation in how that money is spent. Don't like their expensive new headquarters? The stations who paid for it don't seem to mind.
In comparison, when a profit making company takes a loan from a bank or accepts money from an investment company, it gives them seats on their Board. That's the kind of role the stations have at NPR. Their input is balanced with a number of non-station representatives from the usual places. You gotta keep the people who foot the bills happy with what they're getting. The station reps are the one connection NPR has with its listeners. Car companies put the local dealers in charge of that relationship. NPR has its stations.
In my previous post, I asked what alternative you would suggest. I'm still waiting. It should be obvious that I don't have the problem with the NPR system that you have. That's why I'm not offering alternatives. I believe it helps to involve the people who provide the bulk of your funding. Apparently you don't. I don't see how replacing station reps with more outside reps will improve anything. Perhaps you can explain how they would. At least the station people know broadcasting. Some insurance company VP or exec from the Red Cross won't.