So it is not hum. That leaves out TV's and power sources in the house. By the description I would believe 'crackle'. That, unfortunately could mean a lot of things. Since there is a discrete time involved (daylight), depending where you are, it could be a heating problem (expansion) or a drying problem (sun dries off) or wind (typically higher in daylight). Since there was a storm it could be that the local power company has a cracked insulator or dirt/dust on their power transformer (nearby). Try an AM portable tuned between stations to see if it is picking up the same thing. That will help isolate between your system and an external. If it is external then you can use the portable to track it down.
If is is your system, there are a number of causes, water in the coax (dries when the sun comes up), loose connection at either end, kink in the coax (breaks the center conductor). If you have another antenna (a TV antenna on the roof will work for the test) try connecting the scanner up to that and see if it makes a difference in the noise. If it does than I would suspect the coax or the connectors.
If you have a different scanner try hooking that up to scanner antenna to see what happens. It is one of four things:
Scanner antenna, coax, scanner, external interference.