NBC has released two seperate CG machines to the affiliates. The machines used to generate the local time/temp during the today show is a PC called the Namedropper. Last year, NBC released an HD version called the... drumroll... the HD Namedropper. It is used in the HD stream. What WJAR is apparently doing is using the older Namedropper in their SD stream , and the newer HD namedropper in the HD stream, and they are on different temperature probes. As far as it sounds, WHDH isn't using a HD namedropper.
The SD namedropper looks for a signal on the video signal blanking line 18 field 1. The signal comes from NBC in New York, which in turn automatically triggers the Namedropper to insert the time temp during the today show. The HD namedropper trigger is probably coming via a data stream off of the Tiernan HD receiver.